Basic Information
Locus ID:
Sp7g24800.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 7539955 | 7540828 | + | Sp7g24800.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 11,112.35 Da | 47.11 | 59.01 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 16 | 89 | 2.59013E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 18 | 88 | 9.0E-26 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 9 | 94 | 2.0E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 93 | 8.2E-40 | - |
| SMART | SM00213 | ubq_7 | 18 | 89 | 1.7E-15 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 16 | 93 | 16.385197 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_013656546.2 | small ubiquitin-related modifier 1 [Brassica napus] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | M4D1S5 | Small ubiquitin-related modifier OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology