Basic Information
Locus ID:
Sp7g23460.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 7056130 | 7058438 | - | Sp7g23460.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 22,517.75 Da | 70.03 | 84.97 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 70 | 9.39254E-41 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 4.5E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 71 | 3.66E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 92 | 6.0E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 8.8E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.300413 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.5E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.5E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.5E-29 | IPR002100 |
| Coils | Coil | Coil | 119 | 146 | - | - |
| Coils | Coil | Coil | 88 | 108 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51860.2 | K-box region and MADS-box transcription factor family protein . | 0 |
| RefSeq | XP_018509436.1 | MADS-box protein AGL71 isoform X1 [Brassica rapa] | 0 |
| Q9LT93 | MADS-box protein AGL71 OS=Arabidopsis thaliana OX=3702 GN=AGL71 PE=2 SV=1 | 0 | |
| TrEMBL | A0A078ISC4 | BnaA08g30890D protein OS=Brassica napus OX=3708 GN=BnaA08g30890D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology