Basic Information
Locus ID:
Sp7g22560.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase 16-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 6708260 | 6713333 | - | Sp7g22560.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.28 | 111,996.36 Da | 55.96 | 72.39 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 74 | 111 | 1.7E-7 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 549 | 851 | 3.4E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 544 | 858 | 6.08E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 71 | 113 | 1.92E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 541 | 858 | 1.2E-89 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 62 | 115 | 1.9E-10 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 548 | 854 | 47.928322 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 74 | 111 | 11.715014 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 549 | 564 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 974 | 1011 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 1021 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 210 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_006413415.1 | ubiquitin carboxyl-terminal hydrolase 16 [Eutrema salsugineum] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3G1I3 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Noccaea caerulescens OX=107243 GN=LC_TR1328_c0_g1_i1_g.4622 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology