halophFGD

Basic Information

Locus ID: Sp7g21040.v2.2

Species & Taxonomic ID: Schrenkiella parvula & 98039

Genome Assembly: v2.2

Description: Agamous-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ch7-4	6040984	6045172	-	Sp7g21040.v2.2

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.78	35,678.73 Da	58.65	88.53	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00265	MADS_MEF2_like	87	154	2.64261E-40	IPR033896
Pfam	PF00319	SRF-type transcription factor (DNA-binding and dimerisation domain)	94	141	1.3E-25	IPR002100
Pfam	PF01486	K-box region	167	254	1.3E-23	IPR002487
SUPERFAMILY	SSF55455	SRF-like	87	158	5.62E-32	IPR036879
Gene3D	G3DSA:3.40.1810.10	-	98	179	8.9E-29	IPR036879
SMART	SM00432	madsneu2	85	144	8.9E-40	IPR002100
ProSiteProfiles	PS50066	MADS-box domain profile.	85	145	31.454609	IPR002100
ProSiteProfiles	PS51297	K-box domain profile.	170	260	14.24201	IPR002487
ProSitePatterns	PS00350	MADS-box domain signature.	87	141	-	IPR002100
PRINTS	PR00404	MADS domain signature	122	143	6.8E-30	IPR002100
PRINTS	PR00404	MADS domain signature	87	107	6.8E-30	IPR002100
PRINTS	PR00404	MADS domain signature	107	122	6.8E-30	IPR002100
Coils	Coil	Coil	204	253	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription) GO:0045944 (positive regulation of transcription by RNA polymerase II)

Molecular Function:

GO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding) GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0046983 (protein dimerization activity)

Cellular Component:

GO:0005634 (nucleus)

KEGG Pathway

KO Term:

K09260 (MADS-box transcription enhancer factor 2A)

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04022 (cGMP-PKG signaling pathway) map04022 (cGMP-PKG signaling pathway) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G22950.1	AGAMOUS-like 19. MADS-box protein AGL19
RefSeq	XP_048596920.1	agamous-like MADS-box protein AGL19 [Brassica napus]
Swiss-Prot	O82743	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1
TrEMBL	A0A816XPA0	(rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A01P14210.1 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg10149, jg13374, jg14048, jg18452, jg1862, jg2350, jg29292 ... jg34008, jg37180, jg4859, jg7583, jg7584
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1379, gene_14801
Amaranthaceae	Atriplex hortensis	2	Ah003718, Ah023110
Amaranthaceae	Beta vulgaris	1	BVRB_5g101250
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg23664, Sbi_jg49303, Sbi_jg7513
Amaranthaceae	Salicornia europaea	2	Seu_jg12523, Seu_jg5810
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000344, GOSA_00001294
Amaranthaceae	Suaeda glauca	4	Sgl11207, Sgl16602, Sgl51869, Sgl57167
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006308, gene:ENSEOMG00000014504 ... gene:ENSEOMG00000020221, gene:ENSEOMG00000027535, gene:ENSEOMG00000034051, gene:ENSEOMG00000047148
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0005650, CQ.Regalona.r1.2BG0024000 ... CQ.Regalona.r1.5AG0008500, CQ.Regalona.r1.5BG0008750
Anacardiaceae	Pistacia vera	2	pistato.v30003470, pistato.v30011980
Apiaceae	Apium graveolens	6	Ag10G00252, Ag11G03893, Ag5G02767, Ag6G01639, Ag9G00532 ... Ag9G02402
Arecaceae	Cocos nucifera	7	COCNU_07G007820, COCNU_07G007840, COCNU_08G007880 ... COCNU_08G007890, COCNU_09G003370, COCNU_10G006160, COCNU_15G004990
Arecaceae	Phoenix dactylifera	5	gene-LOC103696089, gene-LOC103697443, gene-LOC103702697 ... gene-LOC103706417, gene-LOC103710691
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2369.V1.1, AsparagusV1_08.192.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G23769, Ftri15G21911, Ftri18G13582, Ftri3G09306 ... Ftri5G00137, Ftri9G28338
Brassicaceae	Arabidopsis thaliana	6	AT2G45660.1, AT4G11880.1, AT4G22950.1, AT5G51860.1 ... AT5G51870.3, AT5G62165.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10001632m.g.v1.0, Thhalv10004954m.g.v1.0 ... Thhalv10014716m.g.v1.0, Thhalv10015303m.g.v1.0, Thhalv10026205m.g.v1.0, Thhalv10027077m.g.v1.0, Thhalv10028949m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp2g25340.v2.2, Sp4g27700.v2.2, Sp6g05600.v2.2 ... Sp6g14110.v2.2, Sp6g14120.v2.2, Sp6g14130.v2.2, Sp7g21040.v2.2, Sp7g23460.v2.2
Brassicaceae	Brassica nigra	16	BniB01g001370.2N, BniB02g029370.2N, BniB02g075810.2N ... BniB02g080150.2N, BniB02g081860.2N, BniB03g012800.2N, BniB03g021460.2N, BniB04g002420.2N, BniB04g002690.2N, BniB05g011830.2N, BniB05g014200.2N, BniB06g004060.2N, BniB06g010470.2N, BniB08g029500.2N, BniB08g029770.2N, BniB08g049570.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2026, Ceq03G0484
Casuarinaceae	Casuarina glauca	3	Cgl01G2200, Cgl02G2131, Cgl03G0593
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g03110
Dunaliellaceae	Dunaliella salina	1	Dusal.0260s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g03720, gene.Thate08g07680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11257, nbisL1-mrna-1588, nbisL1-mrna-6116
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2227, evm.TU.LG01.2228, evm.TU.LG01.2229 ... evm.TU.LG01.2230, evm.TU.LG04.978, evm.TU.LG10.1320
Plantaginaceae	Plantago ovata	4	Pov_00016808, Pov_00029041, Pov_00032202, Pov_00033562
Plumbaginaceae	Limonium bicolor	4	Lb1G04390, Lb1G04391, Lb1G04439, Lb2G10497
Poaceae	Echinochloa crus-galli	8	AH01.3086, AH01.5123, AH07.168, BH01.3428, BH01.5088 ... BH01.5259, BH07.33, CH01.3674
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0098670, gene-QOZ80_2AG0115010 ... gene-QOZ80_2BG0152160, gene-QOZ80_2BG0168790, gene-QOZ80_3AG0231610, gene-QOZ80_3BG0296260
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0054220.1, HORVU.MOREX.r3.1HG0054230.1 ... HORVU.MOREX.r3.4HG0412460.1, HORVU.MOREX.r3.6HG0540820.1
Poaceae	Lolium multiflorum	5	gene-QYE76_012332, gene-QYE76_017633, gene-QYE76_019242 ... gene-QYE76_019257, gene-QYE76_071315
Poaceae	Oryza coarctata	8	Oco03G000240, Oco04G000240, Oco05G001340, Oco06G001300 ... Oco11G000450, Oco12G000350, Oco19G008950, Oco20G008820
Poaceae	Oryza sativa	4	LOC_Os02g01355.1, LOC_Os03g03070.1, LOC_Os06g01890.1 ... LOC_Os10g39130.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G302600, gene-BS78_01G500700 ... gene-BS78_04G004400
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0100628, Pt_Chr0100645, Pt_Chr0200696, Pt_Chr0204710 ... Pt_Chr0503074, Pt_Chr0705413, Pt_Ctg00161
Poaceae	Sporobolus alterniflorus	9	Chr01G038570, Chr04G005950, Chr06G028760, Chr06G036350 ... Chr07G005660, Chr09G003640, Chr12G000820, Chr13G021300, Chr15G020020
Poaceae	Thinopyrum elongatum	8	Tel1E01G344500, Tel1E01G344800, Tel4E01G568600 ... Tel4E01G568700, Tel4E01G586900, Tel6E01G040900, Tel6E01G042600, Tel6E01G047500
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG030260, gene_TRIDC1AG030270 ... gene_TRIDC1BG035770, gene_TRIDC4BG058350, gene_TRIDC5AG073470, gene_TRIDC6AG001250
Poaceae	Triticum aestivum	12	TraesCS1A02G199600.2, TraesCS1A02G199900.1 ... TraesCS1B02G214500.1, TraesCS1B02G214600.1.cds1, TraesCS1D02G203300.2, TraesCS1D02G203400.1, TraesCS4B02G346700.1, TraesCS4D02G341700.1, TraesCS5A02G515500.1, TraesCS6A02G011700.1, TraesCS6B02G017900.1, TraesCS6D02G014600.1
Poaceae	Zea mays	3	Zm00001eb001670_P005, Zm00001eb393670_P002 ... Zm00001eb403750_P001
Poaceae	Zoysia japonica	6	nbis-gene-3104, nbis-gene-36177, nbis-gene-36179 ... nbis-gene-4697, nbis-gene-47065, nbis-gene-52305
Poaceae	Zoysia macrostachya	5	Zma_g12810, Zma_g14800, Zma_g15593, Zma_g2204, Zma_g4551
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.2786, evm.TU.LG04.2364, evm.TU.LG04.3456 ... evm.TU.LG10.274, evm.TU.LG16.130, evm.TU.LG17.268, evm.TU.LG19.1201
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g07470
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_11_RagTag.1315, evm.TU.Scaffold_4_RagTag.346 ... evm.TU.Scaffold_14_RagTag.255, evm.TU.Scaffold_16_RagTag.241, evm.TU.Scaffold_5_RagTag.341, evm.TU.Scaffold_9_RagTag.385
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-10913, nbisL1-mrna-18127, nbisL1-mrna-22484 ... nbisL1-mrna-29024
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10074, nbisL1-mrna-15726, nbisL1-mrna-1606 ... nbisL1-mrna-18560, nbisL1-mrna-7439
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12892, nbisL1-mrna-1960, nbisL1-mrna-20272 ... nbisL1-mrna-7119, nbisL1-mrna-8458
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.308, evm.TU.utg000006l.530 ... evm.TU.utg000007l.216, evm.TU.utg000008l.222, evm.TU.utg000010l.336, evm.TU.utg000022l.348
Rhizophoraceae	Kandelia obovata	6	Maker00000686, Maker00008916, Maker00009412, Maker00013628 ... Maker00014303, Maker00018317
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-16087, nbisL1-mrna-19490, nbisL1-mrna-19491 ... nbisL1-mrna-19492, nbisL1-mrna-22672, nbisL1-mrna-3489, nbisL1-mrna-6875, nbisL1-mrna-6876, nbisL1-mrna-9239
Rhizophoraceae	Rhizophora mangle	11	nbisL1-mrna-10828, nbisL1-mrna-12717, nbisL1-mrna-12718 ... nbisL1-mrna-12719, nbisL1-mrna-12721, nbisL1-mrna-12722, nbisL1-mrna-12723, nbisL1-mrna-12724, nbisL1-mrna-20643, nbisL1-mrna-6633, nbisL1-mrna-6973
Salicaceae	Populus euphratica	7	populus_peu03482, populus_peu27801, populus_peu28876 ... populus_peu30275, populus_peu30566, populus_peu31740, populus_peu34322
Solanaceae	Lycium barbarum	9	gene-LOC132603858, gene-LOC132631808, gene-LOC132633009 ... gene-LOC132634991, gene-LOC132639068, gene-LOC132645637, gene-LOC132645638, gene-LOC132645639, gene-LOC132645640
Solanaceae	Solanum chilense	6	SOLCI002559400, SOLCI002559500, SOLCI004080500 ... SOLCI004571300, SOLCI004797500, SOLCI007115800
Solanaceae	Solanum pennellii	7	gene-LOC107001949, gene-LOC107006635, gene-LOC107009850 ... gene-LOC107009862, gene-LOC107013793, gene-LOC107021365, gene-LOC107027318
Tamaricaceae	Reaumuria soongarica	6	STRG.29203_chr11_+, gene_11143, gene_14129, gene_15148 ... gene_485, gene_5190
Tamaricaceae	Tamarix chinensis	1	TC03G2728
Zosteraceae	Zostera marina	3	Zosma01g41420.v3.1, Zosma02g06390.v3.1, Zosma02g24860.v3.1