Basic Information
Locus ID:
Sp7g20290.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
heterochromatin assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 5774555 | 5777220 | - | Sp7g20290.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 25,506.74 Da | 37.78 | 58.30 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 30 | 164 | 2.19137E-58 | - |
| Pfam | PF00628 | PHD-finger | 148 | 196 | 4.2E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 31 | 143 | 3.9E-22 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 140 | 196 | 4.87E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 210 | 9.2E-21 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 140 | 1.4E-30 | IPR043151 |
| SMART | SM00249 | PHD_3 | 148 | 195 | 9.9E-10 | IPR001965 |
| SMART | SM00439 | BAH_4 | 29 | 144 | 4.8E-41 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 29 | 144 | 23.297022 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 146 | 197 | 9.071699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 149 | 194 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 224 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | NP_001031695.1 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A178UYA0 | (thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=At4g22140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology