Basic Information
Locus ID:
Sp7g19780.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
C-terminal domain phosphatase-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 5546483 | 5553356 | + | Sp7g19780.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 108,403.54 Da | 63.09 | 76.95 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 213 | 378 | 4.97593E-22 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 268 | 377 | 2.1E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 856 | 919 | 4.1E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 854 | 927 | 6.62E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 724 | 788 | 3.47E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 151 | 402 | 8.79E-20 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 718 | 792 | 1.5E-5 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 149 | 403 | 6.2E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 855 | 925 | 2.4E-8 | - |
| SMART | SM00358 | DRBM_3 | 725 | 789 | 1.8E-7 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 855 | 923 | 6.7E-7 | IPR014720 |
| SMART | SM00577 | forpap2 | 211 | 387 | 4.5E-28 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 152 | 402 | 15.174825 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 724 | 790 | 11.285643 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 854 | 924 | 11.795446 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 605 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 605 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 963 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 681 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_006413749.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Eutrema salsugineum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MIM3 | protein-serine/threonine phosphatase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024324mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology