Basic Information
Locus ID:
Sp7g17750.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 4721036 | 4727402 | + | Sp7g17750.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 138,134.33 Da | 47.71 | 71.97 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 779 | 835 | 3.99532E-32 | - |
| CDD | cd04716 | BAH_plantDCM_I | 520 | 637 | 1.78977E-56 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 849 | 1205 | 7.1E-33 | IPR001525 |
| Pfam | PF01426 | BAH domain | 522 | 633 | 9.0E-12 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 780 | 834 | 2.2E-12 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 766 | 835 | 6.47E-15 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 669 | 1205 | 3.21E-74 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 778 | 1222 | 7.2E-208 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 654 | 761 | 5.4E-12 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 998 | 1171 | 7.2E-208 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 460 | 621 | 1.3E-44 | IPR043151 |
| SMART | SM00298 | chromo_7 | 779 | 838 | 2.9E-14 | IPR000953 |
| SMART | SM00439 | BAH_4 | 521 | 636 | 1.9E-26 | IPR001025 |
| PIRSF | PIRSF037404 | DNMT1 | 135 | 418 | 1600.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 827 | 1101 | 8.4E-39 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 1127 | 1217 | 1.5E-15 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 474 | 650 | 3.4E-6 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 611 | 739 | 3.5E-5 | IPR017198 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 670 | 1212 | 44.823853 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 780 | 833 | 13.209101 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 521 | 636 | 18.766191 | IPR001025 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 939 | 952 | 6.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 671 | 687 | 6.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 893 | 907 | 6.3E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 778 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_006414021.2 | DNA (cytosine-5)-methyltransferase CMT2 [Eutrema salsugineum] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | V4MG42 | DNA (cytosine-5-)-methyltransferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024250mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology