Basic Information
Locus ID:
Sp7g17050.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 4387542 | 4411475 | + | Sp7g17050.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 470,502.03 Da | 45.04 | 88.63 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 804 | 904 | 7.16452E-5 | - |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 108 | 8.4E-31 | IPR026854 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3173 | 3337 | 3.0E-9 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 561 | 782 | 4.0E-34 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 4.3E-65 | IPR031646 |
| Pfam | PF00169 | PH domain | 803 | 908 | 1.1E-8 | IPR001849 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2191 | 2338 | 1.7E-8 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1965 | 2119 | 1.3E-10 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 797 | 911 | 2.69E-10 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 797 | 912 | 1.3E-6 | IPR011993 |
| SMART | SM00233 | PH_update | 801 | 911 | 4.0E-9 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 800 | 909 | 9.8511 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1812 | 1831 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_048594639.1 | uncharacterized protein LOC106360702 isoform X1 [Brassica napus] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3E6L3 | Putative vacuolar protein sorting-associated protein 13A OS=Noccaea caerulescens OX=107243 GN=GA_TR16159_c0_g1_i1_g.51576 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology