Basic Information
Locus ID:
Sp7g16390.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 4141303 | 4143164 | + | Sp7g16390.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 33,858.82 Da | 44.47 | 76.07 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 68 | 1.7E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 78 | 2.31E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 3.4E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 6.8E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.110626 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 257 | - | - |
| Coils | Coil | Coil | 223 | 243 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_048632788.1 | binding partner of ACD11 1-like [Brassica napus] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TEQ6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_089812 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology