Basic Information
Locus ID:
Sp7g16240.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 4058499 | 4060699 | + | Sp7g16240.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 65,399.86 Da | 46.97 | 67.29 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 411 | 488 | 1.1613E-48 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 34 | 232 | 1.9E-52 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 418 | 463 | 2.5E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 417 | 486 | 1.27E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 407 | 480 | 2.6E-17 | IPR036638 |
| SMART | SM00353 | finulus | 420 | 469 | 2.1E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 414 | 463 | 17.085117 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 422 | - | - |
| Coils | Coil | Coil | 460 | 487 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17880.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_006414178.1 | transcription factor MYC4 [Eutrema salsugineum] | 0 |
| O49687 | Transcription factor MYC4 OS=Arabidopsis thaliana OX=3702 GN=MYC4 PE=1 SV=1 | 0 | |
| TrEMBL | V4P7R1 | BHLH domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024688mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology