Basic Information
Locus ID:
Sp7g14550.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 3332962 | 3340374 | + | Sp7g14550.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 123,774.59 Da | 41.47 | 79.05 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 906 | 940 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 480 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 823 | 1088 | 5.95E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 344 | 654 | 4.16E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 747 | 954 | 9.9E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 956 | 1100 | 1.1E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 288 | 535 | 1.4E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 539 | 679 | 2.0E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 526 | 569 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 858 | 898 | 2.2 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.3E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 439 | 480 | 4.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1054 | 1086 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 523 | 0.0036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 572 | 612 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 434 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 901 | 940 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 0.37 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 0.0022 | IPR006594 |
| SMART | SM00320 | WD40_4 | 814 | 855 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 990 | 1032 | 1.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 446 | 489 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 590 | 621 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.453111 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.081095 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 908 | 943 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 908 | 949 | 12.079106 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1093 | 1120 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_006414395.1 | topless-related protein 2 isoform X1 [Eutrema salsugineum] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | V4MRL0 | Topless-related protein 2 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024263mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology