Basic Information
Locus ID:
Sp7g13700.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 2948538 | 2951627 | + | Sp7g13700.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 66,334.62 Da | 42.13 | 102.43 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 423 | 445 | 0.94 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 164 | 185 | 0.012 | IPR001611 |
| Pfam | PF12937 | F-box-like | 10 | 39 | 2.6E-6 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 448 | 469 | 0.17 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 526 | 547 | 0.63 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 190 | 212 | 0.023 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 397 | 419 | 0.35 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 475 | 497 | 8.5E-4 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 133 | 545 | 2.55E-53 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 48 | 3.4E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 358 | 609 | 2.5E-58 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 120 | 176 | 3.4E-12 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 47 | 1.5E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 177 | 357 | 3.5E-45 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 243 | 267 | 55.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 500 | 525 | 0.046 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 423 | 448 | 0.0016 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 293 | 318 | 0.0099 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 268 | 292 | 8.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 499 | 0.47 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 526 | 551 | 3.7E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 371 | 396 | 9.3E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 397 | 422 | 1.1E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 217 | 242 | 58.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 190 | 215 | 1.4E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 552 | 577 | 10.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 11 | 52 | 0.0021 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 165 | 189 | 0.16 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 449 | 474 | 8.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 139 | 164 | 0.0024 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 345 | 370 | 1.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 319 | 344 | 7.5E-4 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 113 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15475.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_006414505.1 | F-box/LRR-repeat protein 4 [Eutrema salsugineum] | 0 |
| Q9C5D2 | F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1 | 0 | |
| TrEMBL | V4MRU8 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024700mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4170 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30237970, pistato.v30238000 |
| Apiaceae | Apium graveolens | 1 | Ag1G01919 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1400.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22647 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15475.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073970.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1413 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00026246, Pov_00026249, Pov_00034018 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00114 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2463, BH04.2128, CH02.1614, CH03.2032, CH04.2458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0690790, gene-QOZ80_9BG0717100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0365590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065994 |
| Poaceae | Oryza coarctata | 2 | Oco21G008990, Oco22G010240 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g30980.1, LOC_Os10g05800.2, LOC_Os11g42160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G225300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103366 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G014250, Chr31G008270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G244800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG020800, gene_TRIDC4BG024690 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G142500.3, TraesCS4D02G148000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115300_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37587, nbis-gene-37589, nbis-gene-58391 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18228, Zma_g18230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2060, evm.TU.LG14.358 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.507 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1455 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.912 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012570 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6308 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642061 |
| Solanaceae | Solanum chilense | 1 | SOLCI001496100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1503 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26890.v3.1 |