Basic Information
Locus ID:
Sp7g12630.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
protein binding ubiquitin-protein ligase zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 2415152 | 2415835 | - | Sp7g12630.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 13,555.55 Da | 64.09 | 72.48 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 23 | 63 | 2.7E-6 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 18 | 89 | 6.83E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 114 | 5.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 23 | 63 | 6.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 23 | 64 | 11.087743 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 39 | 48 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 117 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.3 | - | 0 |
| RefSeq | XP_052110291.1 | E3 ubiquitin protein ligase DRIP1 [Arachis duranensis] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7RCK3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_045464 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25168, Sbi_jg9010 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19581 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42444, Sgl47173 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12630.v2.2 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.507 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20398, nbis-gene-39672, nbis-gene-39673 |