Basic Information
Locus ID:
Sp7g12380.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 2305324 | 2309770 | + | Sp7g12380.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 65,459.17 Da | 49.40 | 75.09 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14273 | UBA_TAP-C_like | 16 | 47 | 1.7848E-6 | - |
| CDD | cd02958 | UAS | 121 | 233 | 1.07461E-41 | - |
| CDD | cd01767 | UBX | 320 | 381 | 3.06012E-10 | - |
| Pfam | PF13899 | Thioredoxin-like | 128 | 206 | 4.3E-10 | - |
| Pfam | PF14555 | UBA-like domain | 11 | 47 | 1.7E-9 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 320 | 384 | 1.81E-8 | IPR029071 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 108 | 236 | 4.47E-30 | IPR036249 |
| SUPERFAMILY | SSF46934 | UBA-like | 6 | 47 | 5.27E-5 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 318 | 386 | 1.9E-8 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 123 | 235 | 1.3E-35 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 1 | 58 | 4.0E-8 | - |
| SMART | SM00594 | 45neu3 | 109 | 233 | 2.2E-34 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 320 | 383 | 12.903955 | IPR001012 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14250.1 | structural constituent of ribosome. | 0 |
| RefSeq | XP_022556712.1 | putative plant UBX domain-containing protein 14 [Brassica napus] | 0 |
| P0DKI4 | Putative plant UBX domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUX14 PE=5 SV=1 | 0 | |
| TrEMBL | V4LZZ2 | UBX domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027208mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold021020G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106832 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp6g06930.v2.2, Sp7g12220.v2.2, Sp7g12230.v2.2 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6149 |