Basic Information
Locus ID:
Sp7g12250.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
LicD family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 2239172 | 2240454 | + | Sp7g12250.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 35,587.97 Da | 47.92 | 76.10 | -0.36 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62380.1 | 0 | |
| RefSeq | XP_006416037.1 | putative F-box protein At1g71320 [Eutrema salsugineum] | 0 |
| Q9FVV8 | Putative F-box protein At1g71320 OS=Arabidopsis thaliana OX=3702 GN=At1g71320 PE=4 SV=1 | 0 | |
| TrEMBL | V4K9P0 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009972mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G33530.1, AT1G71320.1, AT3G62350.1, AT3G62380.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009802m.g.v1.0, Thhalv10009811m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp1g28940.v2.2, Sp1g29020.v2.2, Sp1g33930.v2.2 ... |
| Brassicaceae | Brassica nigra | 2 | BniB05g024070.2N, BniB08g066240.2N |