Basic Information
Locus ID:
Sp7g12210.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-4 | 2215684 | 2216980 | - | Sp7g12210.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.41 | 44,348.92 Da | 63.57 | 76.93 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 308 | 382 | 9.7973E-16 | - |
| CDD | cd02958 | UAS | 110 | 224 | 8.97695E-39 | - |
| Pfam | PF13899 | Thioredoxin-like | 116 | 196 | 1.1E-9 | - |
| Pfam | PF14555 | UBA-like domain | 47 | 84 | 2.9E-9 | - |
| Pfam | PF00789 | UBX domain | 306 | 372 | 3.0E-8 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 290 | 383 | 6.46E-17 | IPR029071 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 93 | 226 | 1.34E-27 | IPR036249 |
| Gene3D | G3DSA:3.10.20.90 | - | 301 | 382 | 2.3E-13 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 45 | 87 | 7.2E-8 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 114 | 225 | 1.7E-32 | - |
| SMART | SM00594 | 45neu3 | 98 | 223 | 2.7E-35 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 302 | 382 | 21.527004 | IPR001012 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14245.1 | - | 0 |
| RefSeq | XP_009139540.1 | plant UBX domain-containing protein 16-like [Brassica rapa] | 0 |
| P0DKI4 | Putative plant UBX domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUX14 PE=5 SV=1 | 0 | |
| TrEMBL | A0A8X8B938 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008626 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027233m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12210.v2.2 |