Basic Information
Locus ID:
Sp7g06820.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-2 | 1029849 | 1031878 | + | Sp7g06820.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 23,167.94 Da | 30.46 | 89.42 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 4.01164E-51 | - |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 104 | 163 | 8.4E-14 | IPR001351 |
| Pfam | PF07650 | KH domain | 20 | 93 | 2.5E-12 | IPR004044 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 94 | 163 | 1.96E-13 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 13 | 99 | 1.66E-23 | IPR009019 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 87 | 5.8E-45 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 88 | 194 | 5.7E-34 | IPR036419 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 8 | 163 | 1.7E-46 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 10.345816 | IPR004044 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_010435439.1 | PREDICTED: 40S ribosomal protein S3-3-like [Camelina sativa] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | V4MGR0 | KH type-2 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017148mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology