Basic Information
Locus ID:
Sp7g04420.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-1 | 2010822 | 2011448 | - | Sp7g04420.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 23,772.77 Da | 59.61 | 90.39 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 152 | 196 | 9.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 201 | 2.01E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 200 | 9.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 153 | 195 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 196 | 12.031935 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018463889.1 | PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Raphanus sativus] | 0 |
| TrEMBL | A0A6J0LVR7 | E3 ubiquitin-protein ligase RNF181-like OS=Raphanus sativus OX=3726 GN=LOC108835082 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT5G37200.1, AT5G37220.1, AT5G37230.1, AT5G37250.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10028290m.g.v1.0, Thhalv10028317m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp3g29000.v2.2, Sp6g06800.v2.2, Sp6g10420.v2.2 ... |
| Brassicaceae | Brassica nigra | 3 | BniB01g030310.2N, BniB01g030320.2N, BniB03g062660.2N |