Basic Information
Locus ID:
Sp7g04410.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-1 | 2009335 | 2009934 | - | Sp7g04410.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 22,914.59 Da | 65.85 | 89.50 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 149 | 194 | 2.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 197 | 1.01E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 199 | 7.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 150 | 193 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 150 | 194 | 13.13841 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_033145912.1 | E3 ubiquitin-protein ligase AIP2 [Brassica rapa] | 0 |
| Q3T0W3 | E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1 | 0 | |
| TrEMBL | M4EH75 | RING-type domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT5G37200.1, AT5G37220.1, AT5G37230.1, AT5G37250.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10028290m.g.v1.0, Thhalv10028317m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp3g29000.v2.2, Sp6g06800.v2.2, Sp6g10420.v2.2 ... |
| Brassicaceae | Brassica nigra | 3 | BniB01g030310.2N, BniB01g030320.2N, BniB03g062660.2N |