Basic Information
Locus ID:
Sp7g03880.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
CONTAINS InterPro DOMAIN s DDT superfamily (InterPro IPR018501), DDT subgroup (InterPro IPR018500), Cell division cycle-associated protein (InterPro IPR018866)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-1 | 1735402 | 1738053 | + | Sp7g03880.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 55,710.68 Da | 44.51 | 72.73 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 14 | 109 | 1.1E-26 | IPR018866 |
| Pfam | PF15612 | WSTF, HB1, Itc1p, MBD9 motif 1 | 301 | 331 | 7.4E-5 | IPR028942 |
| SMART | SM00571 | testlast3 | 194 | 259 | 1.7E-6 | IPR018501 |
| ProSiteProfiles | PS50827 | DDT domain profile. | 194 | 259 | 8.936588 | IPR018501 |
| Coils | Coil | Coil | 326 | 373 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38690.1 | Zinc-finger domain of monoamine-oxidase A repressor R1 protein. | 0 |
| RefSeq | XP_018453642.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108824747 [Raphanus sativus] | 0 |
| Q96GN5 | Cell division cycle-associated 7-like protein OS=Homo sapiens OX=9606 GN=CDCA7L PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0L0H2 | LOW QUALITY PROTEIN: uncharacterized protein LOC108824747 OS=Raphanus sativus OX=3726 GN=LOC108824747 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17253, jg19552 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16598 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035453 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g026520 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21872, Sbi_jg29522 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15876 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008501, GOSA_00008502 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63173, Sgl63310, Sgl67787 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018935, gene:ENSEOMG00000023586 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0017760, CQ.Regalona.r1.2AG0019550 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30146140, pistato.v30191740 |
| Apiaceae | Apium graveolens | 6 | Ag10G00614, Ag1G00293, Ag4G00509, Ag4G00510, Ag4G00511 ... |
| Arecaceae | Cocos nucifera | 2 | scaffold019397G000010, scaffold030933G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714000 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.3076.V1.1, AsparagusV1_01.3077.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G34102, Ftri18G30116 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G67270.1, AT1G67780.1, AT5G38690.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10015379m.g.v1.0, Thhalv10018457m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp5g22200.v2.2, Sp7g03230.v2.2, Sp7g03880.v2.2 ... |
| Brassicaceae | Brassica nigra | 6 | BniB03g044490.2N, BniB05g063340.2N, BniB06g060200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0766 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0763 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0042s00005.v1.0, Dusal.0120s00021.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g27390, gene.Thate04g19810, gene.Thate07g21020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11849 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2022, evm.TU.LG02.428 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00013964, Pov_00028238, Pov_00028239, Pov_00028241 ... |
| Plumbaginaceae | Limonium bicolor | 4 | Lb6G29840, Lb6G29841, Lb6G29847, Lb6G29848 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.1371, BH07.1561, CH07.1431 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0111570, gene-QOZ80_2BG0165030 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0231630.1, HORVU.MOREX.r3.6HG0565670.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_017876, gene-QYE76_017877, gene-QYE76_020198 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G008640, Oco04G009050, Oco09G005700, Oco10G006290 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g20950.1, LOC_Os05g23530.4 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G120600, gene-BS78_04G131700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0201868, Pt_Chr0202474, Pt_Chr0202475 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030590, Chr09G001490, Chr15G021980 |
| Poaceae | Thinopyrum elongatum | 6 | Tel3E01G145500, Tel3E01G145600, Tel6E01G287400 ... |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC2BG044370, gene_TRIDC3AG009660 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS3A02G080700.1, TraesCS3B02G095100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb181150_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43914, nbis-gene-45288 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12667, Zma_g15251 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.824, evm.TU.LG18.171, evm.TU.LG25.504 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g02770, gene.Posoc04g22810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.480 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15386 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15786 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-380 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.260 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007662 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13820 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3762 |
| Salicaceae | Populus euphratica | 3 | populus_peu04735, populus_peu04736, populus_peu12940 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623090 |
| Solanaceae | Solanum chilense | 1 | SOLCI004370000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008878 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16798_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1212 |
| Zosteraceae | Zostera marina | 3 | Zosma01g04020.v3.1, Zosma01g31980.v3.1, Zosma01g32050.v3.1 |