Basic Information
Locus ID:
Sp7g03580.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-1 | 1576704 | 1579578 | - | Sp7g03580.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 41,595.14 Da | 51.26 | 80.43 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 73 | 8.75833E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 158 | 207 | 1.84696E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 165 | 202 | 1.4E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 269 | 324 | 8.6E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 349 | 384 | 1.3E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 75 | 1.8E-18 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 161 | 212 | 4.03E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 265 | 330 | 3.27E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 7.43E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 332 | 391 | 1.53E-14 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 258 | 325 | 3.0E-28 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 1.1E-27 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 341 | 388 | 2.9E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 157 | 208 | 9.9E-22 | - |
| SMART | SM00165 | uba_6 | 164 | 204 | 1.4E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 349 | 386 | 5.1E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 74 | 3.0E-20 | IPR000626 |
| SMART | SM00727 | CBM | 267 | 310 | 9.8E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 392 | 3.4E-114 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 78 | 18.998245 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 346 | 387 | 14.812021 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 162 | 205 | 12.305923 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 375 | 390 | 8.3E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 295 | 317 | 8.3E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 343 | 359 | 8.3E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 360 | 374 | 8.3E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 125 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_013588046.1 | PREDICTED: ubiquitin receptor RAD23d [Brassica oleracea var. oleracea] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A3P6G8W6 | Ubiquitin receptor RAD23 OS=Brassica oleracea OX=3712 GN=BOLC6T37023H PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology