Basic Information
Locus ID:
Sp7g03520.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-1 | 1545831 | 1547180 | + | Sp7g03520.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 50,797.87 Da | 45.20 | 96.73 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 82 | 425 | 2.4E-113 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 214 | 436 | 6.0E-44 | IPR038538 |
| SMART | SM00733 | mt_12 | 132 | 164 | 1.3 | IPR003690 |
| SMART | SM00733 | mt_12 | 269 | 300 | 0.53 | IPR003690 |
| SMART | SM00733 | mt_12 | 305 | 335 | 0.0065 | IPR003690 |
| SMART | SM00733 | mt_12 | 234 | 264 | 3.2 | IPR003690 |
| SMART | SM00733 | mt_12 | 340 | 371 | 0.0041 | IPR003690 |
| SMART | SM00733 | mt_12 | 96 | 127 | 1.5E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 372 | 406 | 0.051 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61990.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_002888053.1 | transcription termination factor MTERF15, mitochondrial [Arabidopsis lyrata subsp. lyrata] | 0 |
| TrEMBL | A0A1J3GI16 | Transcription termination factor 3, mitochondrial OS=Noccaea caerulescens OX=107243 GN=LE_TR21026_c0_g1_i1_g.67700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |