Basic Information
Locus ID:
Sp7g03190.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-1 | 1357977 | 1361066 | - | Sp7g03190.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 65,110.50 Da | 50.20 | 92.47 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 31 | 73 | 7.2E-7 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 216 | 304 | 1.9E-18 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 81 | 4.19E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 68 | 7.7E-6 | - |
| SMART | SM00256 | fbox_2 | 32 | 72 | 4.2E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 124 | 303 | 1.9E-37 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 26 | 73 | 9.735919 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32420.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_013633140.1 | PREDICTED: putative F-box protein At1g32420 [Brassica oleracea var. oleracea] | 0 |
| Q9LQL5 | Putative F-box protein At1g32420 OS=Arabidopsis thaliana OX=3702 GN=At1g32420 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0D3BZV3 | F-box domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106338788 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 26 | Sp1g30460.v2.2, Sp1g31270.v2.2, Sp1g31830.v2.2 ... |