Basic Information
Locus ID:
Sp7g01440.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-1 | 547481 | 548965 | + | Sp7g01440.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 54,531.33 Da | 50.82 | 108.83 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 53 | 280 | 6.2E-6 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 200 | 481 | 4.32E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 3 | 283 | 6.1E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 285 | 490 | 4.5E-23 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 406 | 431 | 0.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 222 | 247 | 700.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 325 | 350 | 3.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 121 | 145 | 700.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 432 | 457 | 20.0 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40470.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_009140008.1 | F-box/LRR-repeat protein 7 [Brassica rapa] | 0 |
| TrEMBL | A0A3P6CDT0 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA04T17009Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17768, jg40395 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24802 |
| Apiaceae | Apium graveolens | 1 | Ag9G00450 |
| Arecaceae | Cocos nucifera | 1 | scaffold012454G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697634 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G30970 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G40470.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028043m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g01440.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g026230.2N, BniB02g026600.2N, BniB03g039930.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g15710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10329 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.301 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017754, Pov_00024171 |
| Poaceae | Echinochloa crus-galli | 2 | BH09.2929, CH09.3140 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0682270, gene-QOZ80_9BG0707840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349780.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064815 |
| Poaceae | Oryza coarctata | 1 | Oco22G005660 |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.74 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G046600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G007630, Chr17G006880 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G180300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG033330, gene_TRIDC4BG017500 |
| Poaceae | Zea mays | 1 | Zm00001eb246170_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48788 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18734 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1832, evm.TU.LG11.1192 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g37970, gene.Posoc05g08110 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1925 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2406, nbisL1-mrna-2571 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6771 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3092 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.23 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002181 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21538 |
| Salicaceae | Populus euphratica | 2 | populus_peu05201, populus_peu38309 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622589 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010292 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1613 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0952 |
| Zosteraceae | Zostera marina | 1 | Zosma05g15020.v3.1 |