Basic Information
Locus ID:
Sp7g00980.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch7-1 | 358271 | 359881 | - | Sp7g00980.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 57,508.40 Da | 48.84 | 72.72 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 114 | 164 | 2.51314E-17 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 114 | 154 | 1.9E-4 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 271 | 315 | 9.7E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 184 | 249 | 2.5E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 318 | 8.83E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 256 | 1.08E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 196 | 1.35E-16 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 245 | 487 | 2.9E-72 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 194 | 1.4E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 258 | 315 | 4.4E-5 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 184 | 249 | 8.6E-21 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 160 | 9.700961 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 110 | 319 | 46.663605 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 276 | 315 | 8.535474 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 297 | 306 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013630746.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Brassica oleracea var. oleracea] | 0 |
| Q9SKC2 | Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana OX=3702 GN=ARI11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S9J4I9 | RBR-type E3 ubiquitin transferase OS=Brassica cretica OX=69181 GN=F2Q68_00001272 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology