Basic Information
Locus ID:
Sp6g40450.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
serine threonine-protein kinase At5g41260
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 10957119 | 10959556 | + | Sp6g40450.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 56,145.63 Da | 50.39 | 77.42 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 76 | 307 | 4.6E-25 | IPR001245 |
| SUPERFAMILY | SSF48452 | TPR-like | 395 | 489 | 1.52E-14 | IPR011990 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 33 | 317 | 3.23E-44 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 30 | 132 | 1.9E-27 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 387 | 493 | 9.5E-15 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 134 | 321 | 1.8E-41 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 44 | 311 | 20.909145 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01060.1 | Protein kinase protein with tetratricopeptide repeat domain. | 0 |
| RefSeq | XP_006398657.1 | probable serine/threonine-protein kinase At5g41260 isoform X1 [Eutrema salsugineum] | 0 |
| Q9M324 | Serine/threonine-protein kinase BSK6 OS=Arabidopsis thaliana OX=3702 GN=BSK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6D2L7T5 | Serine/threonine-protein kinase BSK OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS49029 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G09240.1, AT5G01060.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013351m.g.v1.0, Thhalv10020637m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g07620.v2.2, Sp6g40450.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g055450.2N, BniB02g058000.2N, BniB05g031390.2N ... |