Basic Information
Locus ID:
Sp6g39710.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
UPL4
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 10714838 | 10722077 | - | Sp6g39710.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 118,315.62 Da | 46.48 | 90.26 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 665 | 1052 | 1.44224E-126 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 711 | 1054 | 7.0E-85 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 2 | 195 | 3.14E-5 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 658 | 1047 | 1.19E-96 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 1 | 105 | 1.3E-5 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 938 | 1052 | 8.9E-35 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 610 | 825 | 1.1E-37 | - |
| SMART | SM00119 | hect_3 | 675 | 1054 | 3.4E-101 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 679 | 1054 | 63.109169 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 432 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_024012668.1 | E3 ubiquitin-protein ligase UPL4 isoform X2 [Eutrema salsugineum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | V4LK70 | HECT-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012430mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology