Basic Information
Locus ID:
Sp6g39480.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 10640143 | 10642344 | - | Sp6g39480.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 64,418.84 Da | 41.19 | 89.22 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 123 | 1.105E-44 | - |
| Pfam | PF03000 | NPH3 family | 217 | 462 | 1.7E-76 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 25 | 114 | 2.4E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 115 | 2.72E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 15 | 148 | 3.9E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 122 | 0.004 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 98 | 12.308835 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 217 | 486 | 80.16259 | IPR027356 |
| Coils | Coil | Coil | 519 | 546 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_006398770.2 | BTB/POZ domain-containing protein At5g03250 [Eutrema salsugineum] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2CKP1 | BTB/POZ domain OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_At05g002250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology