Basic Information
Locus ID:
Sp6g38290.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
protein binding, zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 10174512 | 10179183 | - | Sp6g38290.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 100,031.43 Da | 68.77 | 65.05 | -1.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 810 | 850 | 6.27721E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 808 | 855 | 7.6E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 810 | 856 | 3.71E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 793 | 861 | 1.5E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 811 | 850 | 10.836942 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 323 | - | - |
| Coils | Coil | Coil | 740 | 760 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020878126.1 | uncharacterized protein LOC9307165 [Arabidopsis lyrata subsp. lyrata] | 0 |
| TrEMBL | A0A565CHM9 | RING-type domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS23647 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology