Basic Information
Locus ID:
Sp6g36310.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Transcription factor jumonji aspartyl beta-hydroxylase (InterPro IPR003347), F-box domain, Skp2-like (InterPro IPR022364), Transcription factor jumonji (InterPro IPR013129)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 9496728 | 9498619 | + | Sp6g36310.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 58,865.36 Da | 46.89 | 86.63 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13621 | Cupin-like domain | 213 | 432 | 1.4E-24 | IPR041667 |
| SUPERFAMILY | SSF81383 | F-box domain | 87 | 159 | 6.05E-9 | IPR036047 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 201 | 445 | 1.65E-56 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 86 | 163 | 3.1E-6 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 182 | 433 | 5.8E-77 | - |
| SMART | SM00558 | cupin_9 | 279 | 448 | 1.6E-13 | IPR003347 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 288 | 448 | 38.572289 | IPR003347 |
| Coils | Coil | Coil | 26 | 49 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06550.1 | 0 | |
| RefSeq | XP_006399127.1 | F-box protein At5g06550 [Eutrema salsugineum] | 0 |
| Q67XX3 | Arginine-specific demethylase JMJ22 OS=Arabidopsis thaliana OX=3702 GN=JMJ22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3D1B4 | F-box protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR8960_c0_g1_i1_g.28556 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31898 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15283 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002928 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15827, Sbi_jg56622 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13827 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00014437, GOSA_00027055, GOSA_00027172 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52609, Sgl57899 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006593, gene:ENSEOMG00000022129 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0011970, CQ.Regalona.r1.5BG0012210 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30277130 |
| Apiaceae | Apium graveolens | 1 | Ag10G02117 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707320 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1642.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G03641 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013290m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36310.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g054230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0985 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1109, Cgl04G1404 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06260 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0308s00011.v1.0, Dusal.0823s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g10250 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1774 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036291 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11166 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1692, BH04.1685, CH04.1923 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0684970, gene-QOZ80_9BG0711040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066485 |
| Poaceae | Oryza coarctata | 2 | Oco21G007470, Oco22G008630 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g36450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G172100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103291 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G015970, Chr16G005580, Chr17G004990, Chr31G006960 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G744700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG061620, gene_TRIDC7BG054800 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G443400.1, TraesCS7B02G342200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb200180_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44217 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18094 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1040, evm.TU.LG20.835 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g09160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1086 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4101 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14686 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10188 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.595 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005368 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12503 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5670 |
| Salicaceae | Populus euphratica | 1 | populus_peu26006 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607255 |
| Solanaceae | Solanum chilense | 1 | SOLCI000938700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032279 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12209 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G3018 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18780.v3.1 |