Basic Information
Locus ID:
Sp6g35670.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 9257028 | 9258306 | + | Sp6g35670.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 27,199.61 Da | 64.14 | 66.77 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 185 | 227 | 1.7E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 230 | 9.51E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 231 | 5.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 226 | 1.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 227 | 10.423858 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 150 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07225.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009125682.1 | RING finger protein 44 isoform X2 [Brassica rapa] | 0 |
| Q9VE61 | E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1 | 0 | |
| TrEMBL | V4LLH0 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015609mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07225.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g028480.2N |
| Salicaceae | Populus euphratica | 1 | populus_peu30598 |