Basic Information
Locus ID:
Sp6g35610.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 9237552 | 9241346 | - | Sp6g35610.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 137,664.95 Da | 30.38 | 104.37 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 995 | 1264 | 2.27822E-103 | - |
| Pfam | PF13516 | Leucine Rich repeat | 541 | 556 | 1.1 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 112 | 171 | 2.3E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 650 | 710 | 6.5E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 60 | 2.7E-9 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 992 | 1260 | 1.3E-46 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 186 | 207 | 0.23 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 257 | 279 | 1.1 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 336 | 587 | 4.42E-52 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 598 | 882 | 5.61E-61 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 970 | 1261 | 1.75E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 36 | 330 | 2.18E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 592 | 892 | 3.6E-87 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1065 | 1264 | 5.9E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 179 | 331 | 2.4E-42 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 953 | 1064 | 2.2E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 178 | 2.9E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 332 | 591 | 4.9E-75 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 649 | 681 | 36.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 422 | 445 | 520.0 | - |
| SMART | SM00369 | LRR_typ_2 | 542 | 565 | 310.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 989 | 1262 | 3.3E-35 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 134 | 153 | 480.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 721 | 744 | 76.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 255 | 276 | 160.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 819 | 845 | 57.0 | - |
| SMART | SM00369 | LRR_typ_2 | 86 | 110 | 92.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 517 | 541 | 7.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 134 | 157 | 8.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 721 | 745 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 795 | 819 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 697 | 720 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 158 | 182 | 6.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 207 | 231 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 374 | 398 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 183 | 206 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 255 | 279 | 62.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 649 | 673 | 5.4 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 651 | 673 | 7.026593 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 160 | 182 | 7.619546 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 989 | 1264 | 38.520111 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1111 | 1123 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 995 | 1018 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 649 | 662 | 1.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 137 | 150 | 1.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_006399210.1 | leucine-rich repeat receptor protein kinase EMS1 [Eutrema salsugineum] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LLH5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012465mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |