Basic Information
Locus ID:
Sp6g34550.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 8868802 | 8875267 | - | Sp6g34550.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 92,031.50 Da | 43.99 | 82.88 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 261 | 1.40168E-65 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 53 | 87 | 6.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 44 | 0.0073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 171 | 1.1E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 129 | 8.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 213 | 2.2E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 675 | 830 | 4.0E-49 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 294 | 2.52E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 171 | 5.7E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 172 | 305 | 6.0E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 216 | 254 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 2.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 129 | 4.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 5.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 171 | 7.4E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 8.4E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 16.323217 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 96 | 15.253835 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 44 | 8.623787 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 131 | 12.077406 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 180 | 17.726782 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 216 | 12.973764 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 139 | 176 | 13.606489 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 89 | 11.365591 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 200 | 214 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 158 | 172 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 200 | 214 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 116 | 130 | 1.3E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 835 | 20.195808 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 383 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_009131065.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Brassica rapa] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WR43 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_005601 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology