Basic Information
Locus ID:
Sp6g34330.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 8794538 | 8798375 | + | Sp6g34330.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 65,443.60 Da | 46.09 | 92.13 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 266 | 558 | 8.04981E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 346 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 558 | 7.7E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 515 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 300 | 8.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 261 | 558 | 5.76E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 256 | 524 | 6.7E-56 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 525 | 583 | 3.8E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 6.3E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 96 | 153 | 4.6E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 390 | 430 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 470 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 301 | 6.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 559 | 2.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 516 | 0.78 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 63 | 95 | 8.929162 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 568 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 526 | 561 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 355 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 310 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 303 | 10.548323 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 96 | 153 | 10.557937 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 350 | 9.651964 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 288 | 302 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 375 | 389 | 3.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 546 | 560 | 3.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 288 | 302 | 3.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006399358.1 | WD repeat-containing protein 26 homolog [Eutrema salsugineum] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | V4N5M9 | WD repeat-containing protein 26 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013060mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology