Basic Information
Locus ID:
Sp6g34310.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 8786406 | 8793361 | - | Sp6g34310.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 122,241.69 Da | 40.68 | 79.90 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 395 | 464 | 2.1E-4 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 911 | 944 | 0.0017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 343 | 664 | 3.34E-41 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 829 | 1090 | 1.67E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 827 | 1097 | 7.1E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 548 | 826 | 1.6E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 324 | 547 | 6.5E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 862 | 902 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 905 | 944 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 489 | 5.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 381 | 0.89 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.3E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 817 | 859 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 533 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 625 | 666 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 579 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 442 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 622 | 1.2 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 912 | 944 | 10.258324 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 455 | 498 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 912 | 953 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.404455 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 600 | 631 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.099821 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1111 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_006399361.1 | topless-related protein 4 [Eutrema salsugineum] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1J3DXR1 | Topless-related protein 4 OS=Noccaea caerulescens OX=107243 GN=GA_TR5211_c0_g1_i1_g.16854 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology