Basic Information
Locus ID:
Sp6g34140.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 8723628 | 8726436 | + | Sp6g34140.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 81,885.86 Da | 52.03 | 66.35 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 246 | 295 | 1.8E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 160 | 229 | 4.9E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 299 | 4.24E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 236 | 1.19E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 100 | 169 | 4.82E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 178 | 3.8E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 225 | 457 | 8.9E-28 | - |
| SMART | SM00647 | ibrneu5 | 160 | 229 | 3.1E-18 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 238 | 299 | 5.6E-5 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 80 | 303 | 31.730442 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 470 | 489 | - | IPR001876 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08730.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_013607412.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI16 [Brassica oleracea var. oleracea] | 0 |
| Q9C5A4 | Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana OX=3702 GN=ARI16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3EGS8 | RBR-type E3 ubiquitin transferase OS=Brassica oleracea var. oleracea OX=109376 GN=106314010 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013280m.g.v1.0, Thhalv10015828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp4g18730.v2.2, Sp5g15470.v2.2, Sp5g15490.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB05g027560.2N, BniB08g058640.2N, BniB08g058660.2N ... |