Basic Information
Locus ID:
Sp6g32400.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 8099848 | 8103698 | - | Sp6g32400.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 63,681.04 Da | 26.70 | 103.06 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 368 | 3.6846E-29 | - |
| CDD | cd00030 | C2 | 445 | 541 | 2.47514E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 250 | 3.2E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 443 | 537 | 2.3E-24 | IPR000008 |
| Pfam | PF00168 | C2 domain | 264 | 368 | 1.0E-25 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 262 | 394 | 3.42E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 439 | 562 | 7.29E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 257 | 392 | 4.9E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 423 | 562 | 3.0E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 444 | 542 | 1.9E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 265 | 365 | 1.3E-25 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 423 | 543 | 21.500345 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 251 | 31.365385 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 245 | 366 | 22.324142 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 486 | 499 | 9.8E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 508 | 516 | 9.8E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 460 | 472 | 9.8E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_013620100.1 | PREDICTED: synaptotagmin-4 [Brassica oleracea var. oleracea] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J3ISV4 | Synaptotagmin-4 OS=Noccaea caerulescens OX=107243 GN=MP_TR19764_c0_g1_i1_g.56578 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology