Basic Information
Locus ID:
Sp6g31880.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 7878456 | 7880543 | + | Sp6g31880.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 64,099.25 Da | 66.83 | 63.72 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 134 | 184 | 2.16806E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 288 | 333 | 1.7E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 203 | 267 | 2.3E-15 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 134 | 166 | 2.1E-4 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 215 | 4.28E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 334 | 1.06E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 274 | 1.55E-11 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 263 | 538 | 1.1E-78 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 217 | 3.1E-20 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 280 | 341 | 0.047 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 203 | 267 | 1.0E-24 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 180 | 9.937009 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 130 | 345 | 50.536591 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 316 | 325 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 500 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006417975.1 | probable E3 ubiquitin-protein ligase ARI5 isoform X2 [Eutrema salsugineum] | 0 |
| Q8L829 | Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana OX=3702 GN=ARI5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J3FPG0 | RBR-type E3 ubiquitin transferase OS=Noccaea caerulescens OX=107243 GN=LC_TR19728_c0_g1_i1_g.65966 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology