Basic Information
Locus ID:
Sp6g31480.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 7741895 | 7748367 | + | Sp6g31480.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 92,449.04 Da | 58.39 | 79.23 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 21 | 116 | 2.46853E-10 | - |
| CDD | cd00159 | RhoGAP | 181 | 334 | 9.2056E-37 | - |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 2.1E-30 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 601 | 680 | 1.9E-19 | IPR025757 |
| Pfam | PF00169 | PH domain | 19 | 124 | 1.6E-12 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 16 | 130 | 5.48E-17 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 372 | 1.18E-30 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 149 | 370 | 3.1E-39 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 7 | 127 | 8.1E-17 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 178 | 368 | 3.9E-23 | IPR000198 |
| SMART | SM00233 | PH_update | 19 | 127 | 1.1E-15 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 371 | 28.238888 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 14.7316 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 437 | - | - |
| Coils | Coil | Coil | 566 | 586 | - | - |
| Coils | Coil | Coil | 649 | 683 | - | - |
| Coils | Coil | Coil | 790 | 817 | - | - |
| Coils | Coil | Coil | 591 | 625 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12150.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_006399732.1 | rho GTPase-activating protein 6 [Eutrema salsugineum] | 0 |
| Q9FMP8 | Rho GTPase-activating protein 6 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP6 PE=2 SV=1 | 0 | |
| TrEMBL | V4KTA8 | Rho GTPase-activating protein 7-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012698mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology