Basic Information
Locus ID:
Sp6g29420.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 6972659 | 6977195 | - | Sp6g29420.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 70,458.23 Da | 52.51 | 65.06 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 20 | 51 | 5.66647E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 382 | 511 | 4.46514E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 187 | 356 | 1.1E-47 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 394 | 502 | 2.9E-32 | IPR001650 |
| Pfam | PF00397 | WW domain | 19 | 49 | 1.0E-6 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 11 | 49 | 2.54E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 235 | 518 | 2.57E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 373 | 544 | 1.1E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 71 | 1.0E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 138 | 372 | 8.3E-86 | IPR027417 |
| SMART | SM00487 | ultradead3 | 182 | 385 | 1.4E-60 | IPR014001 |
| SMART | SM00456 | ww_5 | 18 | 51 | 1.4E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 422 | 502 | 5.0E-33 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 397 | 541 | 25.068695 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 194 | 368 | 28.610508 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 163 | 191 | 11.320569 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 17 | 51 | 11.1717 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 314 | 322 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 23 | 49 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.5 | - | 0 |
| RefSeq | XP_024012675.1 | DEAD-box ATP-dependent RNA helicase 46 [Eutrema salsugineum] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8S2ALV5 | Genome assembly, chromosome: 6 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS15255 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology