Basic Information
Locus ID:
Sp6g28330.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase At3g02290-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 6563063 | 6564251 | - | Sp6g28330.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 26,318.89 Da | 58.57 | 55.00 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 181 | 222 | 3.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 176 | 228 | 2.59E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 227 | 7.5E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 182 | 222 | 8.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 182 | 222 | 12.076194 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 127 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15790.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006400103.1 | E3 ubiquitin-protein ligase At3g02290 [Eutrema salsugineum] | 0 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 0 | |
| TrEMBL | V4N7F7 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10014574mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg17552, jg19742, jg40158, jg5340, jg7162 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24259, gene_3884 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035615 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21664, Sbi_jg22148 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16078 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008698 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62626, Sgl67191 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017007, gene:ENSEOMG00000020744 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018120, CQ.Regalona.r1.2BG0019680 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30167690, pistato.v30192650, pistato.v30226540 |
| Apiaceae | Apium graveolens | 3 | Ag1G00259, Ag4G00981, Ag5G00107 |
| Arecaceae | Cocos nucifera | 5 | COCNU_05G001620, COCNU_11G004030, COCNU_13G005410 ... |
| Arecaceae | Phoenix dactylifera | 8 | gene-LOC103696993, gene-LOC103698642, gene-LOC103699434 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_06.1990.V1.1, AsparagusV1_09.1509.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G12871, Ftri17G11634, Ftri3G22552 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G02290.1, AT5G15790.1, AT5G38895.3 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10014574m.g.v1.0, Thhalv10019777m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g01350.v2.2, Sp5g24180.v2.2, Sp6g28330.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g028780.2N, BniB01g061090.2N, BniB02g047040.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G0923, Ceq08G0503 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0967, Cgl08G0465 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno08g05100, gene.Cymno09g05990, gene.Cymno10g06740 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g26320, gene.Thate02g29890, gene.Thate04g06270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5791, nbisL1-mrna-9879 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.331, evm.TU.LG02.962, evm.TU.LG05.2113 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00023703, Pov_00027315, Pov_00028098 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G00440, Lb1G01382, Lb1G02004, Lb3G20869 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.4378, AH04.2025, BH04.2058, CH02.4462, CH04.2392 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0045060, gene-QOZ80_1BG0095080 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0312000.1, HORVU.MOREX.r3.4HG0361220.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_057545, gene-QYE76_065917 |
| Poaceae | Oryza coarctata | 4 | Oco01G028910, Oco02G030020, Oco21G008720, Oco22G009980 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g70160.1, LOC_Os11g41140.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_03G388600, gene-BS78_03G414600, gene-BS78_K099500 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103316, Pt_Chr0602606 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr02G002110, Chr03G023180, Chr05G032370, Chr07G014750 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G695400, Tel4E01G281100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG062230, gene_TRIDC3BG069830 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G439700.1, TraesCS3B02G473700.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb142740_P002, Zm00001eb166460_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10935, nbis-gene-53635 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11846, Zma_g18215, Zma_g19070, Zma_g9303 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.721, evm.TU.LG25.602 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc04g10460, gene.Posoc05g14570, gene.Posoc06g19420 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1683, evm.TU.Scaffold_6_RagTag.425 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15291, nbisL1-mrna-1985, nbisL1-mrna-2131 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11496, nbisL1-mrna-15750 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2883, nbisL1-mrna-338 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.232, evm.TU.utg000019l.217 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002121, Maker00007100 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11727, nbisL1-mrna-5317 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13048, nbisL1-mrna-3808 |
| Salicaceae | Populus euphratica | 5 | populus_peu03899, populus_peu09390, populus_peu09416 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621202, gene-LOC132621716 |
| Solanaceae | Solanum chilense | 2 | SOLCI001634400, SOLCI002333500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008656, gene-LOC107008965 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12724, gene_7134 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0131, TC05G1353 |
| Zosteraceae | Zostera marina | 3 | Zosma02g01170.v3.1, Zosma03g29760.v3.1, Zosma05g09120.v3.1 |