Basic Information
Locus ID:
Sp6g27690.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 6335831 | 6336568 | - | Sp6g27690.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 28,268.91 Da | 48.10 | 86.69 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 187 | 228 | 2.40408E-15 | - |
| Pfam | PF13639 | Ring finger domain | 186 | 228 | 1.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 233 | 1.81E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 234 | 3.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 227 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 228 | 12.931868 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018448710.1 | PREDICTED: RING-H2 finger protein ATL57 [Raphanus sativus] | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6D2KBE1 | RING-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS30658 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015768m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g15980.v2.2, Sp6g16100.v2.2, Sp6g27690.v2.2 |