Basic Information
Locus ID:
Sp6g27280.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
nucleic acid binding nucleotide binding oxidoreductase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 6159677 | 6162461 | - | Sp6g27280.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 24,962.34 Da | 39.29 | 66.33 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 67 | 3.4E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 90 | 5.37E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 102 | 6.9E-13 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 71 | 2.8E-11 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 75 | 13.157274 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 237 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16840.3 | binding partner of acd11 1. | 0 |
| RefSeq | XP_013622730.1 | PREDICTED: binding partner of ACD11 1-like isoform X2 [Brassica oleracea var. oleracea] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3B1J4 | RRM domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106328767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology