Basic Information
Locus ID:
Sp6g25300.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 5418899 | 5420941 | - | Sp6g25300.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 42,987.82 Da | 64.74 | 63.65 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 320 | 360 | 1.81049E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 319 | 365 | 5.4E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 366 | 3.06E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 370 | 2.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 359 | 8.0E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 292 | 371 | 7.0E-9 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 16 | 103 | 1500.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 360 | 11.589345 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19080.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013667391.2 | probable E3 ubiquitin-protein ligase LUL3 [Brassica napus] | 0 |
| Q84ME1 | Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana OX=3702 GN=LUL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S363 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_036615 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology