Basic Information
Locus ID:
Sp6g25020.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
GTPase-activator protein for Rho-like GTPases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 5293977 | 5301738 | - | Sp6g25020.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 95,710.87 Da | 56.36 | 73.76 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 176 | 313 | 8.04241E-35 | - |
| CDD | cd00821 | PH | 21 | 120 | 4.23285E-11 | - |
| Pfam | PF00169 | PH domain | 20 | 124 | 2.5E-13 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 176 | 320 | 5.8E-33 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 608 | 687 | 5.4E-21 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 176 | 369 | 3.14E-34 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 15 | 131 | 2.38E-17 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 9 | 127 | 5.9E-17 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 143 | 369 | 1.0E-41 | IPR008936 |
| SMART | SM00233 | PH_update | 19 | 127 | 4.5E-16 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 173 | 364 | 7.0E-26 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 167 | 367 | 30.280214 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 14.9813 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 731 | 799 | - | - |
| Coils | Coil | Coil | 598 | 632 | - | - |
| Coils | Coil | Coil | 196 | 223 | - | - |
| Coils | Coil | Coil | 822 | 849 | - | - |
| Coils | Coil | Coil | 656 | 690 | - | - |
| Coils | Coil | Coil | 573 | 593 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_006400497.1 | rho GTPase-activating protein 7 isoform X2 [Eutrema salsugineum] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | V4KVE4 | Rho GTPase-activating protein 7-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012649mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology