Basic Information
Locus ID:
Sp6g24460.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Transducin family protein WD-40 repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 5100144 | 5106375 | + | Sp6g24460.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 67,267.19 Da | 47.34 | 73.76 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 530 | 552 | 0.068 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 276 | 595 | 5.19E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 360 | 598 | 6.3E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 187 | 359 | 3.2E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 557 | 596 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 552 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 412 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 309 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 421 | 459 | 18.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 276 | 312 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 318 | 11.310488 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 200 | - | - |
| Coils | Coil | Coil | 47 | 74 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19920.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006400556.1 | uncharacterized protein LOC18017854 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LEA7 | WD_REPEATS_REGION domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013007mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18379 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13943 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001525 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30848, Sbi_jg58417 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28294 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004870 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54954, Sgl60213 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007564, gene:ENSEOMG00000023546 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018080, CQ.Regalona.r1.5BG0019230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012590 |
| Apiaceae | Apium graveolens | 3 | Ag4G00025, Ag4G00051, Ag9G01226 |
| Arecaceae | Cocos nucifera | 2 | contig69058962G000010, scaffold030607G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715359 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1628.V1.1, AsparagusV1_10.386.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G02735 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G19920.1, AT5G50970.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013007m.g.v1.0, Thhalv10013209m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g13140.v2.2, Sp6g24460.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042800.2N, BniB05g043450.2N, BniB08g018260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1936 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2101 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g00020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11840 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.556 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24229, Lb4G25721, Lb5G27028 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.597, BH01.129, CH09.3330 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0253150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0535010.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G029050, Oco06G030070 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G008900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106584, Pt_Chr0106609 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G000350, Chr12G031770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G861400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG049630, gene_TRIDC5BG081340 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G328700.2, TraesCS5B02G542700.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb064630_P001, Zm00001eb210690_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16760 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2357, Zma_g45 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2733, evm.TU.LG02.157, evm.TU.LG09.1395 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g00030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.303 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29055 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6907 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2002 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000403 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14717 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1305 |
| Salicaceae | Populus euphratica | 4 | populus_peu28958, populus_peu28959, populus_peu30366 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603604, gene-LOC132633158 |
| Solanaceae | Solanum chilense | 1 | SOLCI005895300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005175, gene-LOC107013032 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16051 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0758 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07820.v3.1 |