Basic Information
Locus ID:
Sp6g22470.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 4276497 | 4279067 | - | Sp6g22470.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 45,019.16 Da | 57.36 | 63.30 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 162 | 205 | 2.2E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 210 | 268 | 5.1E-25 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 27 | 108 | 5.0E-19 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 162 | 211 | 2.33E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 99 | 156 | 2.88E-18 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 23 | 98 | 4.45E-16 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 234 | 274 | 1.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 208 | 2.2E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 163 | 205 | 4.3E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 98 | 162 | 33.573734 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 20 | 96 | 25.67695 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 163 | 206 | 11.604098 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | NP_197683.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A178ULE4 | RING finger and CHY zinc finger domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At5g22430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology