Basic Information
Locus ID:
Sp6g21880.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 4021384 | 4023393 | + | Sp6g21880.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 74,421.38 Da | 37.61 | 91.50 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 24 | 260 | 4.04389E-77 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 24 | 272 | 2.0E-64 | IPR001220 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 345 | 612 | 4.8E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 324 | 647 | 2.16E-75 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 24 | 260 | 4.66E-58 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 20 | 262 | 7.6E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 328 | 420 | 4.4E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 421 | 622 | 1.5E-53 | - |
| SMART | SM00220 | serkin_6 | 342 | 612 | 3.2E-40 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 342 | 618 | 37.516594 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 348 | 374 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 465 | 477 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60270.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_024011688.1 | L-type lectin-domain containing receptor kinase I.7 [Eutrema salsugineum] | 0 |
| Q9LSS0 | L-type lectin-domain containing receptor kinase I.7 OS=Arabidopsis thaliana OX=3702 GN=LECRK17 PE=2 SV=1 | 0 | |
| TrEMBL | V4LR25 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012889mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G60270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012889m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g21880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g039990.2N |