Basic Information
Locus ID:
Sp6g21740.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
protein serine/threonine kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 3968139 | 3969956 | - | Sp6g21740.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 47,714.28 Da | 42.70 | 74.86 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 92 | 349 | 3.3E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 74 | 397 | 4.45E-62 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 70 | 167 | 1.5E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 168 | 401 | 8.3E-45 | - |
| SMART | SM00220 | serkin_6 | 91 | 395 | 2.8E-22 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 91 | 399 | 32.880646 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 32 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60090.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_018469452.1 | PREDICTED: serine/threonine-protein kinase CDL1-like [Raphanus sativus] | 0 |
| Q6I5Q6 | Receptor-like cytoplasmic kinase 185 OS=Oryza sativa subsp. japonica OX=39947 GN=RLCK185 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VH07 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_022614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G60080.1, AT5G60090.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009373m.g.v1.0, Thhalv10013099m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g21740.v2.2, Sp6g21750.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g039790.2N, BniB02g039820.2N, BniB05g040380.2N ... |