Basic Information
Locus ID:
Sp6g21250.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch6-6 | 3796804 | 3798003 | - | Sp6g21250.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 43,253.55 Da | 76.83 | 66.24 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 194 | 238 | 6.5808E-22 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 256 | 384 | 2.0E-37 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 14 | 49 | 7.5E-15 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 193 | 235 | 6.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 244 | 2.7E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 241 | 1.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 194 | 234 | 2.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 194 | 235 | 12.666314 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 362 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006400946.1 | E3 ubiquitin-protein ligase RDUF2 [Eutrema salsugineum] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | V4LF90 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013762mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology